Why Claude Code and Cursor Keep Breaking Your App (And How to Fix It)

Your app works great for the first few features, then Claude and Cursor start breaking everything. Here's what I learned building multiple apps that actually helped me get to launch.

I've built multiple apps using Claude Code and Cursor over the last few months—small tools, full products with auth and background jobs. Every single one taught me the same lesson: it's easy to move fast when your codebase is 500 lines. It's a completely different story when that becomes 5,000 lines and suddenly Claude and Cursor start breaking things that were working perfectly yesterday.

I had to rebuild or completely refactor entire projects more times than I want to admit. Those failures forced me into a workflow that has actually held up. The breakthrough wasn't writing better prompts in Cursor or switching between Claude models—it was planning how my app would stay organized before writing any code. Here's the process that stopped Claude Code and Cursor from destroying my codebase every time I added a new feature.

Study How Other Apps Are Built Before You Start #

Most people building with Cursor or Claude Code open the chat, describe what they want, and start generating code immediately. This works great for your first few features, then everything falls apart. The code that worked perfectly starts breaking when Claude tries to add new features. It forgets how things connect, breaks old features while adding new ones, and turns your codebase into a mess.

This usually happens around week 5-7 when AI starts making mistakes, and it's a sign your app is getting real, not that you're doing something wrong.

Before you tell Claude Code or Cursor to build anything, figure out exactly what you're actually making. Is it a chat app, an online store backend, or something with recommendations? Then go find open-source projects on GitHub that built something similar. Look at how they organize their code, how they structure their folders, and how different parts connect to each other.

I spent two days looking at how Supabase organized their backend before starting my last project. That research saved me three weeks of having to redo everything later when Claude Code started breaking things because my codebase was a mess. The time you spend learning from well-organized apps always saves you from having to rebuild later.

Have Claude Code Check Your Plan Before Building Anything #

Upload your initial plan or early code to Claude Code and ask it to review how you're building things. Specifically ask: where Claude or Cursor will start breaking things as your codebase grows, what parts are too messy, and how you should organize your code better. This is like having someone experienced look at your plan before you've spent weeks building it.

The review catches problems that aren't obvious when you're just trying to make features work. Claude Code will spot things like files that are too long and should be split up, parts of your code that are connected in confusing ways, and things that will make Claude forget how your app works when you add more features. These are the exact things that cause Claude and Cursor to break your app when your codebase hits 5,000 lines.

I run this check using Claude Code's deep research mode with a document explaining what I'm building. The response usually points me to real apps that are well-organized, which shows me actual examples instead of just theory.

Ask Claude or Cursor How to Keep Your Codebase Organized #

Once Claude Code has reviewed your plan, use Claude deep research mode to figure out how to keep your app organized as it grows. Ask it specifically: how to structure your folders, how to split up big files, how to organize your database code, and where to put different types of logic. Claude pulls examples from real apps like Medusa.js, Strapi, and Supabase that are well-organized.

You're not copying everything they built—most of it is way more complex than you need. The point is learning why they organized things that way. You're figuring out why they put certain code in separate files, how they structure their folders, and how they keep Claude and Cursor from getting confused as the codebase grows.

Write down each piece of your app in separate markdown files explaining how everything connects. One file for login, another for your database setup, another for your API. This feels like extra work when you just want to launch, but it's what stops Claude Code and Cursor from breaking everything when your codebase hits 10,000 lines.

Write Down What You Built As You Go #

Every time you finish building something with Claude Code or Cursor, write a short note about how it connects to everything else. Write down why you made certain choices, what trade-offs you accepted, and what might need to change later.

This helps in two ways. First, it keeps you honest about whether you're actually following your plan. Second, it gives Claude Code or Cursor the information it needs to stay consistent when you're building the next feature three weeks later.

When I skip this step, I end up rebuilding things because I can't remember why I built something a certain way. The five minutes spent writing notes about each feature saves hours of confusion when you're adding to your app later.

Build Slowly and Test Each Feature #

Don't rush. After you build each major feature, test it thoroughly before moving on. Actually try to break it. Click things in the wrong order, leave fields empty, try edge cases. See what breaks while you're still building, not after you think you're done.

Claude Code and Cursor are good at finding problems if you explicitly ask. After building a feature, open a new chat in Cursor and ask: "What's wrong with this code? What will break? What did I forget?" The fresh chat helps it catch issues that the original building session missed because it was focused on making things work, not finding problems.

I caught a database problem this way that worked fine with test data but would have broken everything with real data. Testing thoroughly while building saved me from having to redo the entire feature later.

Have Claude Code or Cursor Review Everything Before You Think You're Done #

When everything feels ready to launch, open a completely new chat in Claude Code or Cursor and have it review your entire app. Start fresh so it's not biased by all the building decisions you made. This is like a final check before you actually try to launch.

Ask specifically: "What's messy in this codebase? What will break? What's missing? What's organized badly?" Claude Code or Cursor will find issues you've stopped noticing because you've been working on the app for weeks.

This final review found problems in every single app I've built. Missing error handling, messy file organization, code that should have been split up, things that were connected in confusing ways. Fixing these before you think you're done is way easier than having to rebuild everything later because Claude and Cursor can't work with your messy codebase anymore.

Study How Successful Apps Are Built #

Ask Claude deep research mode to look at big open-source projects like Medusa.js, Supabase, or Strapi and explain how they're organized. You're not copying what they did—you're learning how they keep their codebases organized so they can actually add features without breaking everything.

These projects started small and grew to thousands of lines of code without turning into a mess. Their organization choices were tested over time, not just theory. Understanding why they structure their folders a certain way, how they split up files, and how they organize different types of code teaches you more than any tutorial.

I spent a week studying how Supabase organized their codebase before building my last project. That research meant Claude Code could actually help me build features without breaking old ones, instead of having to constantly fix things that were working yesterday.

You Don't Need to Be a Real Developer #

Building apps with Claude Code or Cursor that actually get to launch isn't about being a real developer or knowing how to code. It's about planning before you build and keeping things organized. Claude Code and Cursor make this possible because they force you to think clearly about how your app is structured, instead of just building fast and hoping Claude doesn't start breaking everything.

The apps that make it to launch aren't necessarily better coded—they're better organized. That organization happens before you start building in Cursor, not after your codebase is such a mess that Claude can't work with it anymore. Use Claude Code and Cursor to keep your app organized as you build, not just generate code that works today and breaks tomorrow.

Building apps that actually make it to launch is about planning, keeping things organized, writing things down, and checking everything before you think you're done. Claude Code and Cursor just make it possible to do that work without spending years learning how to code first.